The 20+ Paired Reads Have Different Names 2022: Best Guide

The 20+ Paired Reads Have Different Names 2022: Best Guide

Dream Cheeky will help you know Paired Reads Have Different Names 2022: Must Read

1 Paired reads have different names · Issue #228 · lh3/bwa – GitHub

  • Author: github.com
  • Published Date: 10/28/2021
  • Review: 4.96 (986 vote)
  • Summary: · I encountered the issue about “paired reads have different names” in some of my sequencing data. The data are PE reads generated from MiSeq

2 ERROR [mem_sam_pe] paired reads have different names – bytemeta

  • Author: bytemeta.vip
  • Published Date: 11/20/2021
  • Review: 4.59 (282 vote)
  • Summary: ERROR [mem_sam_pe] paired reads have different names #382. Hello,. I am working with metawrap pipeline. I had 206 fastq files that I concatenated twice

3 BWA MEM for single or paired-end reads and own genome – Chipster

  • Author: chipster.csc.fi
  • Published Date: 02/08/2022
  • Review: 4.54 (329 vote)
  • Summary: The reads have to be supplied in fastq format. If two input files is selected, one of the file is used as a reference genome and the another one is used as the 

4 Setting Paired Reads – Geneious Biologics Support

  • Author: help.geneiousbiologics.com
  • Published Date: 01/13/2022
  • Review: 4.24 (372 vote)
  • Summary: · This article discusses setting paired reads without merging. … names differ by a single character as long as the two different characters 

5 Kneaddata 0.10 produces unordered pairs of reads

  • Author: forum.biobakery.org
  • Published Date: 05/02/2022
  • Review: 4.05 (542 vote)
  • Summary: · … I run metawrap binning , bwa have problems with the name of the paired reads and fails: [mem_sam_pe] paired reads have different names: 

6 Bwa双端数据比对错误:paired reads have different names原因及

  • Author: cloud.tencent.com
  • Published Date: 06/02/2022
  • Review: 3.95 (407 vote)
  • Summary: · 用bwa对一个自己构建的模拟数据进行比对的时候,发现bwa sampe过程中直接error跳出,报错:paired reads have different names。

7 How to extract fastq from BAM files – actorsfit

  • Author: blog.actorsfit.com
  • Published Date: 12/12/2021
  • Review: 3.68 (494 vote)
  • Summary: bwa mem refs/AF086833.fa read_1.fq read_2.fq [mem_sam_pe] paired reads have different names: “SRR1553500.11772”, “SRR1553500.43775”

8 [troubleshooting] Download Example FASTQ Files – Clara Parabricks

  • Author: forums.developer.nvidia.com
  • Published Date: 12/11/2021
  • Review: 3.59 (580 vote)
  • Summary: (It might take 13~15 hours for conversion.) Q2: paired reads have different names: “SRR7890824.1.2”, “SRR7890824.1.1”. Doc: somatic pipeline

9 Bwa mem 报错处理:[mem_sam_pe] paired reads have different

  • Author: blog.csdn.net
  • Published Date: 05/26/2022
  • Review: 3.36 (545 vote)
  • Summary: · … 的fastq文件重新比对到参考基因组,报错如下:”[mem_sam_pe] paired reads have different names: “A00575:297:HWHKYDMXX:1:1331:22372:31814:”, 

10 Mapping生成sam文件时出现[mem_sam_pe] paired reads … – 博客园

  • Author: cnblogs.com
  • Published Date: 04/21/2022
  • Review: 3.14 (216 vote)
  • Summary: · mapping生成sam文件时出现[mem_sam_pe] paired reads have different names错误 … done < name.txt #####其中,name.txt指的是包含sample名字文件 

11 Is there a more elegant solution to … – Bioinformatics Stack Exchange

  • Author: bioinformatics.stackexchange.com
  • Published Date: 01/26/2022
  • Review: 2.88 (108 vote)
  • Summary: This fixes the problem and allows BWA-MEM to work. However, header information is discarded. Is there another way to ensure the header names are 

12 Re: [Bio-bwa-help] BWA mem paired reads have different names

  • Author: sourceforge.net
  • Published Date: 06/05/2022
  • Review: 2.74 (144 vote)
  • Summary: · It seems likely that you used a quality filtering program that removed one member of a pair, and created ‘singlet reads’ that no longer have 

13 Importing data from Ion Torrent

  • Author: resources.qiagenbioinformatics.com
  • Published Date: 02/15/2022
  • Review: 2.78 (196 vote)
  • Summary: When the reads have been imported, there will be one file with intact pairs, … connects the right sequences together in the pair based on the read name

14 BWA mem trouble: paired reads have different names – SEQanswers

  • Author: seqanswers.com
  • Published Date: 09/29/2021
  • Review: 2.65 (108 vote)
  • Summary: BWA mem trouble: paired reads have different names. 09-10-2014, 08:44 AM. Hi all… recently I’ve received my raw data for Exome Sequencing .. .how ever 

15 BiologS

  • Author: biologsre.blogspot.com
  • Published Date: 09/08/2021
  • Review: 2.43 (65 vote)
  • Summary: · Paired reads have different names (bwa-mem). This error appears when the FASTQ file was dumped from the SRA file, the `-I | –readids` 

16 Repair Guide – DOE Joint Genome Institute

  • Author: jgi.doe.gov
  • Published Date: 04/16/2022
  • Review: 2.46 (90 vote)
  • Summary: Repair (or re-pair) is designed to fix files of paired reads that became … It operates by parsing the read names, which must be either in normal Illumina 

17 Move paired reads and unapaired reads to separate fastq files

  • Author: home.cc.umanitoba.ca
  • Published Date: 04/01/2022
  • Review: 2.34 (200 vote)
  • Summary: FASTQ PAIR. Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons. This code does one thing: it takes two 

18 What is the right pipeline/workflow for using repair.sh in bbmap

  • Author: researchgate.net
  • Published Date: 08/02/2022
  • Review: 2.16 (93 vote)
  • Summary: Read 1 answer by scientists to the question asked by Adlina Affian on May 31, 2021. … [mem_sam_pe] paired reads have different names: 

19 (How to) Map and clean up short read sequence data efficiently

  • Author: gatk.broadinstitute.org
  • Published Date: 12/15/2021
  • Review: 2.17 (52 vote)
  • Summary: If you have raw reads data in BAM format with appropriately assigned read … the query name of the reads in a pair are marked with /1 or /2 and paired 

20 ERROR [mem_sam_pe] paired reads have different names

  • Author: opensourcebiology.eu
  • Published Date: 09/28/2021
  • Review: 2.01 (194 vote)
  • Summary: · ERROR [mem_sam_pe] paired reads have different names: “A00534:36:HCHN3DRXX:2:1101:7437:1031”, “A00534:36:HCHN3DRXX:2:1101:13693:1031”

21 Is there a more elegant solution to the bwa-mem: paired … – ECHEMI

  • Author: echemi.com
  • Published Date: 11/21/2021
  • Review: 1.88 (78 vote)
  • Summary: Running the program gives me this error: [mem_sam_pe] paired reads have different names: “JQ714243-920-1”, “JQ714243-920-2″Visual inspection shows that the 

22 Bwa双端数据比对错误:paired reads have different names … – 简书

  • Author: jianshu.com
  • Published Date: 03/04/2022
  • Review: 1.81 (148 vote)
  • Summary: bwa双端数据比对错误:paired reads have different names原因及解决方法2021-07-19. python明 关注. 2021.07.19 18:47:18 字数393阅读825

23 Samtools fasta / fastq – converts a SAM/BAM/CRAM file to FASTA or

  • Author: manpages.ubuntu.com
  • Published Date: 02/26/2022
  • Review: 1.66 (172 vote)
  • Summary: The files will be automatically compressed if the file names have a .gz or … It is expected that ordinary single and paired-end sequencing reads will be 

24 Analyzing Paired End Reads – SeekDeep

  • Author: seekdeep.brown.edu
  • Published Date: 12/10/2021
  • Review: 1.52 (57 vote)
  • Summary: To start analysis of paired end Illumina sequence targeted amplicon data you need to create several files describing your data input and the raw sequences 

25 Paired reads have different names (bwa-mem) – Biostars

  • Author: biostars.org
  • Published Date: 11/29/2021
  • Review: 1.52 (54 vote)
  • Summary: BWA requires that paired reads have completely identical read names, so this option isn’t compatible. You could process the file(s) to remove those appended 

26 Bwa mem requires sorted fastq files

  • Author: charles.imbusch.net
  • Published Date: 03/08/2022
  • Review: 1.34 (62 vote)
  • Summary: · … RR as there are not enough pairs [mem_sam_pe] paired reads have different names: “CL100098912L1C001R001_20”, “CL100098912L1C001R001_9”